
   12-Nov-2021 14:27:21 +0100

rootdir = Y:\Biophysics\Experiments\dRT-DC\211019_Faruq_2Wildbats\
sampleName = bat1_8nlps_Cold
measNums = 1 2 3 4 5 
frameNums = 3000 3000 3000 3000 3000 
pixSizeReal = 0.34
pixSizeRec = 0.34
exportMatName = _data_export
firstImageBeforeChannelBegin = 1
lastImageAfterChannelEnd = 1
createResultSubDir = 1
writeStatImages = 1
writeImages = 0
enableFlag = 0
areaRatioFilterLevel = 0.7
areaRatioMax = 1.2
Converting 'M1_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 3455 cell sequences
cell traces covers the whole channel: 1851 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 59
write results (1792 cells):
----------
----------
1792 cells written
Converting 'M2_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2372 cell sequences
cell traces covers the whole channel: 1561 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 86
write results (1475 cells):
----------
----------
1475 cells written
Converting 'M3_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2322 cell sequences
cell traces covers the whole channel: 1431 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 82
write results (1349 cells):
----------
----------
1349 cells written
Converting 'M4_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2125 cell sequences
cell traces covers the whole channel: 1280 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 71
write results (1209 cells):
----------
----------
1209 cells written
Converting 'M5_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2133 cell sequences
cell traces covers the whole channel: 1278 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 71
write results (1207 cells):
----------
----------
1207 cells written
measurement: Y:\Biophysics\Experiments\dRT-DC\211019_Faruq_2Wildbats\bat1_8nlps_Cold\Online\
cell counts:
M#	Th	wholeChannel	areaRatio	written
1	3455	1851	1792	1792
2	2372	1561	1475	1475
3	2322	1431	1349	1349
4	2125	1280	1209	1209
5	2133	1278	1207	1207

   12-Nov-2021 15:22:32 +0100

rootdir = Y:\Biophysics\Experiments\dRT-DC\211019_Faruq_2Wildbats\
sampleName = bat1_8nlps_Cold
measNums = 1 2 3 4 5 
frameNums = 3000 3000 3000 3000 3000 
pixSizeReal = 0.34
pixSizeRec = 0.34
exportMatName = _data_export
firstImageBeforeChannelBegin = 1
lastImageAfterChannelEnd = 1
createResultSubDir = 1
writeStatImages = 1
writeImages = 0
enableFlag = 0
areaRatioFilterLevel = 0.7
areaRatioMax = 1.2
Converting 'M1_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 3455 cell sequences
cell traces covers the whole channel: 1851 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 59
write results (1792 cells):
----------
----------
1792 cells written
Converting 'M2_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2372 cell sequences
cell traces covers the whole channel: 1561 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 86
write results (1475 cells):
----------
----------
1475 cells written
Converting 'M3_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2322 cell sequences
cell traces covers the whole channel: 1431 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 82
write results (1349 cells):
----------
----------
1349 cells written
Converting 'M4_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2125 cell sequences
cell traces covers the whole channel: 1280 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 71
write results (1209 cells):
----------
----------
1209 cells written
Converting 'M5_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2133 cell sequences
cell traces covers the whole channel: 1278 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 71
write results (1207 cells):
----------
----------
1207 cells written
measurement: Y:\Biophysics\Experiments\dRT-DC\211019_Faruq_2Wildbats\bat1_8nlps_Cold\Online\
cell counts:
M#	Th	wholeChannel	areaRatio	written
1	3455	1851	1792	1792
2	2372	1561	1475	1475
3	2322	1431	1349	1349
4	2125	1280	1209	1209
5	2133	1278	1207	1207

   24-Nov-2021 15:10:01 +0100

rootdir = Y:\Biophysics\Experiments\dRT-DC\211019_Faruq_2Wildbats\
sampleName = bat1_8nlps_Cold
measNums = 1 2 3 4 5 
frameNums = 3000 3000 3000 3000 3000 
pixSizeReal = 0.34
pixSizeRec = 0.34
exportMatName = _data_export
firstImageBeforeChannelBegin = 1
lastImageAfterChannelEnd = 1
createResultSubDir = 1
writeStatImages = 1
writeImages = 0
enableFlag = 0
areaRatioFilterLevel = 0.7
areaRatioMax = 1.2
Converting 'M1_2us_70A_0.008000ul_s.tdms'...{Operation terminated by user during <a href="matlab:matlab.internal.language.introspective.errorDocCallback('convertTDMS>hasRawDataInSeg', 'D:\Faruq\Lysosome-data\Ftfit-210920\copied20210421_dRT-DCAnalysis\convertTDMS.m', 1610)" style="font-weight:bold">convertTDMS>hasRawDataInSeg</a> (<a href="matlab: opentoline('D:\Faruq\Lysosome-data\Ftfit-210920\copied20210421_dRT-DCAnalysis\convertTDMS.m',1610,0)">line 1610</a>)


In <a href="matlab:matlab.internal.language.introspective.errorDocCallback('convertTDMS>getChannelInfo', 'D:\Faruq\Lysosome-data\Ftfit-210920\copied20210421_dRT-DCAnalysis\convertTDMS.m', 989)" style="font-weight:bold">convertTDMS>getChannelInfo</a> (<a href="matlab: opentoline('D:\Faruq\Lysosome-data\Ftfit-210920\copied20210421_dRT-DCAnalysis\convertTDMS.m',989,0)">line 989</a>)
            ccnt=hasRawDataInSeg(segCnt,index.(obname));

In <a href="matlab:matlab.internal.language.introspective.errorDocCallback('convertTDMS', 'D:\Faruq\Lysosome-data\Ftfit-210920\copied20210421_dRT-DCAnalysis\convertTDMS.m', 332)" style="font-weight:bold">convertTDMS</a> (<a href="matlab: opentoline('D:\Faruq\Lysosome-data\Ftfit-210920\copied20210421_dRT-DCAnalysis\convertTDMS.m',332,0)">line 332</a>)
    [channelinfo SegInfo]=getChannelInfo(fid,SegInfo,NumOfSeg);

In <a href="matlab:matlab.internal.language.introspective.errorDocCallback('CellPosDeformEval43', 'D:\Faruq\Lysosome-data\Ftfit-210920\copied20210421_dRT-DCAnalysis\CellPosDeformEval43.m', 105)" style="font-weight:bold">CellPosDeformEval43</a> (<a href="matlab: opentoline('D:\Faruq\Lysosome-data\Ftfit-210920\copied20210421_dRT-DCAnalysis\CellPosDeformEval43.m',105,0)">line 105</a>)
tdmsdata = convertTDMS(0,[filedir filename]);
} 
CellPosDeformEval43

   4-Mar-2022 14:05:52 +0100

rootdir = ..\211019_Faruq_2wildbats\
sampleName = 211019_Bat1_8nlps_Cold
measNums = 1 2 3 4 5 
frameNums = 3000 3000 3000 3000 3000 
pixSizeReal = 0.34
pixSizeRec = 0.34
exportMatName = _data_export
firstImageBeforeChannelBegin = 1
lastImageAfterChannelEnd = 1
createResultSubDir = 1
writeStatImages = 1
writeImages = 0
enableFlag = 0
areaRatioFilterLevel = 0.7
areaRatioMax = 1.2
Converting 'M1_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 3455 cell sequences
cell traces covers the whole channel: 1853 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 59
write results (1794 cells):
----------
----------
1794 cells written
Converting 'M2_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2372 cell sequences
cell traces covers the whole channel: 1567 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 86
write results (1481 cells):
----------
----------
1481 cells written
Converting 'M3_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2322 cell sequences
cell traces covers the whole channel: 1431 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 81
write results (1350 cells):
----------
----------
1350 cells written
Converting 'M4_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2125 cell sequences
cell traces covers the whole channel: 1276 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 71
write results (1205 cells):
----------
----------
1205 cells written
Converting 'M5_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2133 cell sequences
cell traces covers the whole channel: 1278 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 71
write results (1207 cells):
----------
----------
1207 cells written
measurement: ..\211019_Faruq_2wildbats\211019_Bat1_8nlps_Cold\Online\
cell counts:
M#	Th	wholeChannel	areaRatio	written
1	3455	1853	1794	1794
2	2372	1567	1481	1481
3	2322	1431	1350	1350
4	2125	1276	1205	1205
5	2133	1278	1207	1207
